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The
JHU Proteomic Database is used to store raw, processed and final
proteomic data from a large number of methods, technologies, clinical
and physiological studies from cardiac studies through the National
Heart, Lung and Blood Institute (NHLBI). This database will be used
to mine information about proteins, protein patterns and post translational
modifications (PTMs) and the associated methods and technologies.
The data will be used to help create "protein profiles" to determine
not only if disease is present, but the severity and progression
of disease in the patient.
The database's schema was developed based on the Proteomics
Experiment Data Repository (PEDRo) data model (Taylor et al (2003)
Nature Biotech 21(3) pp.247-254). The current version is 0.21,
which includes extensions to capture 2D gel experiment data and
other modifications to provide lab and user based identification
of entries. It is implemented on IBM's DB2 database platform.
JHU Proteomic Database Schema and Data Dictionary
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